Harshil Patel
515793c73e
Fix bug with SortMeRna not working on a single db file ( #788 )
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* Fix bug with SortMeRna not working on a single db file
* Remove tag for instances when running just to create index
2021-10-04 12:37:21 +01:00
Harshil Patel
49da864287
Update versions key in meta.yml for all modules ( #787 )
2021-10-03 08:20:26 +01:00
Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural ( #780 )
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* Remove def software line
* Replace version with versions in emit statement
* Fix default software names
2021-10-01 14:04:56 +01:00
Jose Espinosa-Carrasco
5b1cea7f7f
Add bbmap/bbsplit module ( #771 )
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* Add bbmap/bbsplit module
* Conda complains about md5sum
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-30 13:37:35 +01:00
Harshil Patel
9c31cf1566
Fix version commands: round 3 ( #754 )
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* Fix version commands: round 3
* Fix seqkit/split2 modules
2021-09-28 14:37:47 +01:00
Gregor Sturm
906577873b
Bulk update modules to use versions.yml ( #739 )
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* New functions.nf
* Convert code to create versions.yml
* Update meta.yml
* update output channel
* Fix more meta.yml
* Manually update remaining modules
* remove superflous echo
* Fix misformatted meta.yml files
* Fix yaml, was list instead of dict
* fix version for bcftools
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00
Daniel Lundin
97b803a8a7
Module to map reads with BBMap ( #717 )
2021-09-20 11:27:34 +02:00
Daniel Lundin
3a8bfc1d33
Get rid of meta map from bbmap/index ( #700 )
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Got rid of meta map from bbmap/index
2021-09-15 12:38:56 +02:00
Daniel Lundin
0f59b07945
Bbmap index ( #683 )
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BBMap index module
2021-09-03 09:28:28 +02:00
Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
