Kevin
81ed0e0ff2
added meta.yml for umitools ( #860 )
...
* added meta.yml for umitools
* Update modules/umitools/dedup/meta.yml
type: list --> type: file
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/umitools/dedup/meta.yml
aww thanks @drpateh :D
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/umitools/dedup/meta.yml
module can only handle one BAM at a time, ergo
BAM files --> BAM file
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update meta.yml
added `pattern` for input `bam` and `bai`
* removed trailing whitespace to appease linter
* added license to new meta.yml files
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-23 17:30:10 +01:00
Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural ( #780 )
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* Remove def software line
* Replace version with versions in emit statement
* Fix default software names
2021-10-01 14:04:56 +01:00
Gregor Sturm
906577873b
Bulk update modules to use versions.yml ( #739 )
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* New functions.nf
* Convert code to create versions.yml
* Update meta.yml
* update output channel
* Fix more meta.yml
* Manually update remaining modules
* remove superflous echo
* Fix misformatted meta.yml files
* Fix yaml, was list instead of dict
* fix version for bcftools
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00
Harshil Patel
2ade120249
Add --paired flag to umitools dedup and bump to 1.1.2 ( #583 )
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* Add --paired flag to umitools dedup and bump to 1.1.2
* paired not paired_end
* Fix ECLint
2021-07-16 14:21:08 +01:00
Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
