Commit graph

4 commits

Author SHA1 Message Date
James A. Fellows Yates
90aef30f43
Set process label to process_single for modules with no task.cpus usage (#2076)
* Set process label to `process_single` for modules with no `task.cpus` usage

* Fix tests of 'borked' modules

* prettier

* More modules are single-threaded and can use process_single

* Adding process_single to hmmer/esl* modules

* Fix failing tests

* Prettier

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00
James A. Fellows Yates
54ff289487
Update mOTUs to remove now unused channel (#2075)
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Update main.nf

* Remove now unnecessary input channel

* Remove unused channel from tests
2022-09-16 10:23:21 +02:00
James A. Fellows Yates
8372df6fb2
Update MOTUS/MERGE (#2068)
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Add meta to mOTUs merge

* Put tests back to use downloaded db

* Apply suggestions from code review

* Fix test text string

* md5sum -> contains

* Update nextflow.config
2022-09-15 19:45:43 +02:00
James A. Fellows Yates
b02e648c22
Add MOTUS/MERGE (#1734)
* Add motus/merge module, missing test yml

* Fix prefix

* Fix polymersase

* Update test meta.yml

* Try new version system

* Typo fix

* Clairfy docs for the version file

* Switch to directory auto detection

* Now with the change and not just meta

* Remove now unneeded input parameter from test

* Fix input type check

* Try adding db requirement to fix docker issue

* Update modules/motus/merge/main.nf

* Fix input

* Apply suggestions from code review

* Fix md5sums

* Replace debugging db location with actual

* Fix contains due to further varialbility

* Indenting
2022-07-07 09:47:41 +02:00