James A. Fellows Yates
daab0a77dd
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 ( #2107 )
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* Update main.nf
* Update meta.yml
* Re-add logos as not staged in a way that works with MultiQC config files
* Update main.nf
* Remove now unnecessary input channel
* Remove unused channel from tests
* Update hAMRonization to 1.1.1 and add hAMRonization farGene
* Fix hamronizatio ntests
* Prettier
* Fix fargene linting
* Correct file
* Fix fargene output
* Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
* Fix summarise tests
* Prettier
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 15:32:18 +02:00
James A. Fellows Yates
90aef30f43
Set process label to process_single for modules with no task.cpus usage ( #2076 )
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* Set process label to `process_single` for modules with no `task.cpus` usage
* Fix tests of 'borked' modules
* prettier
* More modules are single-threaded and can use process_single
* Adding process_single to hmmer/esl* modules
* Fix failing tests
* Prettier
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00
James A. Fellows Yates
4983f77796
Add hamronization/deeparg ( #1364 )
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* fix: remove left-over unnecessary code
* Add hamronizer/deeparg
* Add when condition
* Apply suggestions from code review
* Update modules/hamronization/deeparg/meta.yml
2022-03-02 13:04:22 +01:00
