Commit graph

9 commits

Author SHA1 Message Date
Sima Rahimi
16536b6936
removed extra ) in the version strings (#1850) 2022-07-05 15:24:08 +02:00
Ramprasad Neethiraj
19cfb4e951 update meta files 2022-05-03 14:53:56 +02:00
Ramprasad Neethiraj
829c15c98b partition 2022-05-03 14:26:34 +02:00
Ramprasad Neethiraj
d2004a2b76 update cnvpytor 2022-05-01 21:14:01 +02:00
Ramprasad Neethiraj
cb54d1ebd7
update stubs (#1488) 2022-04-04 13:18:02 +02:00
Ramprasad Neethiraj
67c1bc9568
Add stubs to cnvpytor module (#1473)
* callcnvs stub and tests

* partition stub and test

* histogram stub and test

* importreaddepth stub and tests

* update module scripts

Co-authored-by: Sima Rahimi <sima.rahimi@gu.se>
2022-04-01 17:35:15 +02:00
Ramprasad Neethiraj
233f2e728b
fix cnvpytor links (#1470) 2022-03-31 10:53:26 +02:00
Edmund Miller
f080015754
Prettier (#1405)
* style: Add prettier config files

* build: Add prettier vscode extension

* ci: Replace markdownlint and yamllint with prettier

* style: Run prettier

* style: Use indent of 2 for markdown as well

https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358

* style: Fix indent

* style: Let editorconfig take over tab widths

* style: yaml => yml

* ci: Run prettier once

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 14:27:50 +01:00
Sima Rahimi
86ac223916
Cnvpytor (#1297)
* Added cnvpytor/importreaddepth module

* Corrected process name in meta.yml file

* added -chrom argument

* space correction

* Added complementary info

* fixed typo

* md5sum added

* modified the module to work on cram files as well

* Added cnvpytor/histogram module and test files

* Added cnvpytor/partition module and test files

* added cnvpytor/callcnvs module and tests

* modified by new modules

* Added test file and fixed input path in modules

* added when block

* little fixes

* skip tracking test.yml

* removed changes to test if conflicts get resolved

* updated outfile name

* corrected the version.yml content
2022-03-15 10:20:46 +01:00