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3 commits

Author SHA1 Message Date
James A. Fellows Yates
d27b7a6fda
Add bracken/combinebrackenoutputs (#2022) 
* Add combinebrackenoutputs

* Prettier and relax tests contains

* Apply suggestions from code review

Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>

Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
 2022-09-07 09:18:21 +02:00
Moritz E. Beber
3a138c2d27
Update bracken (#1982) 
* chore: update version

* tests: update use of kraken2 module
 2022-08-30 15:15:48 +02:00
Moritz E. Beber
9c386c5dd8
Add bracken (#1423) 
* feat: add template for Bracken

* chore: update version

* refactor: change command build

* refactor: rename report variable, change quotes

* docs: remove refactored input parameter

* fix: correctly assign arguments to options

* tests: set up single and paired end tests

* style: apply prettier

* chore: change data sources to official ones

* refactor: rename test workflows

* tests: use correct input to the new UNTAR module

* chore: update md5sums
 2022-03-22 16:40:21 +01:00