2 commits

Author	SHA1	Message	Date
Svyatoslav Sidorov	01dc6a289d	Feat seqtk update (#503) ... * hifiasm copied from fastqc * hifiasm tests init from fastqc * meta.yml init; test.yml and main.nf for printing version * Add hifiasm version printing * Removed spaced on an empty line * Reverted hifiasm from main * hifiasm copied from fastqc * hifiasm tests init from fastqc * meta.yml init; test.yml and main.nf for printing version * Add hifiasm version printing * Removed spaced on an empty line * Reverted hifiasm from main * Added seqtk/subseq and checking for seed in seqtk/sample * Separate authors in software/seqtk/sample/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Align commans in output channesl software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Define prefix in software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Use prefix in output file name software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Define suffix in options in tests/software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Change output file name in tests/software/seqtk/subseq/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Remove a to-do point from tests/software/seqtk/subseq/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Added --no-name into gzip commands * Update samtools from 1.10 to 1.12 (#530) * feat: remove social preview image to use GitHub OpenGraph * feat: update samtools from 1.10 to 1.12 * fix: CI tests * fix: add meta.yml file for samtools/merge * Update software/samtools/merge/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update software/samtools/merge/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * hifiasm copied from fastqc * hifiasm tests init from fastqc * meta.yml init; test.yml and main.nf for printing version * Add hifiasm version printing * Removed spaced on an empty line * Reverted hifiasm from main * Added seqtk/subseq and checking for seed in seqtk/sample * hifiasm copied from fastqc * hifiasm tests init from fastqc * meta.yml init; test.yml and main.nf for printing version * Add hifiasm version printing * Removed spaced on an empty line * Reverted hifiasm from main * Separate authors in software/seqtk/sample/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Align commans in output channesl software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Define prefix in software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Use prefix in output file name software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Define suffix in options in tests/software/seqtk/subseq/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Change output file name in tests/software/seqtk/subseq/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Remove a to-do point from tests/software/seqtk/subseq/test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Added --no-name into gzip commands * Replaced functions.nf in seqtk/subseq * Refreshed tests for sample and subseq * Corrected paired-end test and YAML description for sample Co-authored-by: Sviatoslav Sidorov <sviatoslav.sidorov@crick.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>	2021-06-14 12:23:15 +01:00
Ravneet Bhuller	12ebce50f7	Request to review code for seqtk/sample module (#488) ... * added files * removed file * added file * changed files * changed files * edited file * edited file * edited files * edited files * edited files * edited tags * edited tags * edited tags * edited tags Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com>	2021-05-09 23:55:35 +01:00