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Author SHA1 Message Date
Mahesh Binzer-Panchal
233fa70811
Update manual versioning (#1813) 2022-06-27 10:35:41 +02:00
Adam Talbot
f19ec865aa
vcf2maf module with built in VEP (#1768) 
vcf2maf module created

Additions:
 - vcf2maf module created
 - If VEP is present in PATH, it is added to command
 - If VEP is missing, it is ignored (recommended to skip with --inhibit-vep)
 - VEP version automatically added to versions.yml
 - Uses VEP cache during testing which is added to test-datasets in https://github.com/nf-core/test-datasets/pull/563
 - Default Docker image includes VEP and vcf2maf
 - Test includes without VEP.

Relates to #490
 2022-06-20 18:27:12 +02:00