Commit graph

5 commits

Author SHA1 Message Date
Charles Plessy
894349b9b5
Fix 459 (#534)
* Update test data names.

Closes: #459

Thanks: @FriederikeHanssen

(`samtools` tests are already fixed by another commit)

* Fix file names in tests.

The update of test data name required changes in the test yml files.

I also updated the `bismark/summary/main.nf` file to get its data
from the `params.test_data` map.
2021-06-14 12:24:59 +01:00
Edmund Miller
a3684d9594
Lint modules ci (#389)
* ci: Add modules lint step

Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup

* ci: _ => /

* Update tests/config/pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 09:10:52 +01:00
Kevin Menden
6973df628f
Fixing vcftools and bismark tests (#383)
* fixed vcftools

* fixed genomepreparation, methylationextractor

* fixed deduplicate
2021-03-25 09:12:08 +00:00
Harshil Patel
acb1a12a56
Re-organise all test data (#354)
* Re-organise all test data

* Fix ECLint

* Fix ECLint agaaainn

* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Patrick Hüther
7fe6f9fab2
bismark: remove underscores from process names (#303)
* sanitize process names

no underscores allowed

* remove underscores from process names
2021-03-22 17:46:11 +01:00