Commit graph

5 commits

Author SHA1 Message Date
Kevin
3aacd46da2
Backfill software licenses meta (#876)
* backfilled modules with meta.yml that had no license identifier

* harmonized BSD license names

* whitespace linting at modules/unzip/meta.yml:12

* harmonized software from US NIH-NCBI/NIST to 'US-Government-Work'

* Update modules/bcftools/index/meta.yml

`bcftools` is dual-licensed, use associative array to allow for multiple licenses

Co-authored-by: Michael L Heuer <heuermh@acm.org>

Co-authored-by: Michael L Heuer <heuermh@acm.org>
2021-10-22 15:39:54 -07:00
Harshil Patel
49da864287
Update versions key in meta.yml for all modules (#787) 2021-10-03 08:20:26 +01:00
Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural (#780)
* Remove def software line

* Replace version with versions in emit statement

* Fix default software names
2021-10-01 14:04:56 +01:00
Gregor Sturm
ab67a1d41b
Update fastqc to produce multi-version versions.yml (#665)
* Update fastqc to produce multi-version versions.yml

* Update readme and pull request template

* Fix markdownlint

* remove  variable

* Change publish dir to lowercase

* Re-add getSoftwareName

* Add custom pytest-workflow test to ensure versions.yml is valid

* Add docstring

* Remove __init__.py as it is not needed

* Remove changes to README, since this part went to nf-co.re

* Add NF_CORE_TEST env var

* Fix editorconfig

* Add additional consistency checks for versions.yml

* Update multiqc module

* Fix output channel
2021-09-24 10:01:54 +01:00
Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00