millironx/nf-core_modules
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3 commits

Author SHA1 Message Date
Harshil Patel
c99ab09f8d
Add kraken2 pigz multi-tool container for compressing output fastq files (#434) 
* Add kraken2 pigz multi-tool container for compressing output fastq files

* Add untar to pytest config

* Add untar process to kraken2 tests

* Remove unneeded tags
 2021-04-12 18:47:34 +02:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys (#423) 
* Update functions.nf

* Replace saveAs line in module main script

* Add spacing for ECLint
 2021-04-09 17:23:56 +01:00
Jose Espinosa-Carrasco
313241749c
Add kraken2 run module (#266) 
* Add kraken2 run module

* Add kraken2 run module

* Add coronavirus kraken2 db

* Adding kraken2 run tests

* Update software/kraken2/run/meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Fixing files commited by mistake

* Remove params for meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2021-03-18 13:08:06 +00:00