Edmund Miller
a3684d9594
Lint modules ci ( #389 )
...
* ci: Add modules lint step
Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup
* ci: _ => /
* Update tests/config/pytest_software.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 09:10:52 +01:00
arontommi
d162f21ab3
Update samtools modules with config logic ( #381 )
...
* fixing paths for test
* fixing paths for test
* fixing pats to tests
* fixing paths to tests
* fixing paths to tests
* fixing paths for tests
* fixing paths for tests
* fixing paths for tests
* fixing paths fro tests
* fixing paths for tests
* indentation fixes
* typo
* renaming test results according to new file name
* replacing the md5sums
* fixing brackets
* replacing md5sums
* fixing md5sums
* fixing md5sums'
* Update test.yml
* Update test.yml
* Update test.yml
* Update test.yml
* Update test.yml
* Update test.yml
* Update test.yml
* Update test.yml
Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu>
Co-authored-by: Ramon Rivera <riveravicens@gmail.com>
2021-03-24 18:15:30 +00:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
...
* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
suzannejin
d6850f8312
modified the samtools/fastq module ( #339 )
...
* new module: samtools/fastq
* solve conflict: pytest_software.yml
* solve linting conflicts
* solved EditorConfig linting problem
* Module samtools/fastq:
* output compressed fastq.gz file(s)
* add if conditionals for single/paired reads
* samtools/fastq: modified test.yml
* samtools/fastq: modified main.nf to avoid duplicated part of the script section
Co-authored-by: suzannejin <suzanne.jin@crg.eu>
2021-03-23 17:43:52 +00:00
suzannejin
9115c12f88
new module: samtools/fastq ( #316 )
...
* new module: samtools/fastq
* solve conflict: pytest_software.yml
* solve linting conflicts
* solved EditorConfig linting problem
2021-03-23 12:13:07 +01:00
