* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
* Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting
* Fix bowtie build test * Forgot to delete old bowtie_build * Fix bowtie2 build tests * Add initOptions include on hisat2 extractsplicesites