Commit graph

2 commits

Author SHA1 Message Date
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Abhinav Sharma
3868c3ab4b
Add gtdbtk/classifywf module (#765)
* initial commit [ci skip]

* reuse the modules code from nf-core/mag [ci skip]

* add contextual information for the module [ci skip]

* add stubs to avoid downloading db [ci skip]

* trigger test

* iterate on tests [ci skip]

* itereate tests [ci skip]

* add bins [ci skip]

* fix stubs [ci skip]

* interation on tests with stubs [ci skip]

* use the existing pattern and fasta for input

* accomodate the new version file format

* use variable for the stub [ci skip]

* update the versions file in meta.yml

* Accomodate code review regarding publishDir function [ci skip]

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* remove extra newline

* use bioconda channel

* update the description for filtered file

* Apply suggestions from code review

* Update main.nf

* Update main.nf

* Update modules/gtdbtk/classifywf/meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-05 21:23:01 +01:00