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7 commits

Author SHA1 Message Date
Jose Espinosa-Carrasco
95e02f913f
Update comments with new style ()
* Update comment style on functions.nf files

* Update test main.nf comments

* Add meta for ggread
2021-05-12 14:56:46 +01:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ()
* Update functions.nf

* Replace saveAs line in module main script

* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Patrick Hüther
3b1dcc9cc0
MethylDackel: fix version scraping ()
* methyldackel: fix version scraping

* fix output file path
2021-04-06 10:59:33 +01:00
Patrick Hüther
c736022942
methyldackel: bump version to 0.5.2 () 2021-03-22 17:46:28 +01:00
Patrick Hüther
8a44258548
remove params section from meta.yml () 2021-03-19 13:16:50 +01:00
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ()
* Remove def from module options definition in main

* Fix bismark_deduplicate tests

* Fix bwameth_align tests

* Fixing gatk4 conda tests ("=" instead of ':' in build id)

* Same as previous commit (Fix gatk4 test)

* Fix qualimap bamqc test (no md5 check for pngs)

* Fix seqkit split2 tests. Changed to new test data

* Fix samtools tests. Some were missing initOptions include

* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
phue
5ad7c6bc51 add methyldackel/extract + tests + testdata 2021-02-17 19:18:55 +01:00