James A. Fellows Yates
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a740a6ff48
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New module: checkm/lineagewf (#899)
* Specify more guidelines on input channels
* Linting
* Updates based on code review
* Update README.md
* Fix broken sentence
* feat: add megahit module, currently decompressed output
* Update main.nf
* Update tests/modules/megahit/test.yml
Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* feat: compress all outputs, remove md5sums due to gz stochasicity
* fix: wrong conda channel for pigz
* fix: broken singleend tests and update meta.yml
* Missed one
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* fix: pigz formatting
* Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Apply suggestions from code review
* Added but test failing due to null on output channel
* fix prefix variable
* Complete checkm_lineagewf
* Remove TODOs
* Add description of fasta_ext parameter
* Improve meta map for this context
* Update meta.yml
* Update modules/checkm/lineagewf/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
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2021-10-26 21:54:10 +01:00 |
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