4 commits

Author	SHA1	Message	Date
FriederikeHanssen	257078bb39	Update strelka, by enabling BP if Manta candidates are present (#923) ... * add BP to strelka/somatic * merge conflicts * update strelka modules for BP * update strelka modules for BP * apply suggestions from code review	2021-10-27 17:49:54 +02:00
FriederikeHanssen	754db250a0	Add Manta/somatic module + (fix tiny strelka params problem, i know bad practice :( ) (#912) ... * remove params statement * add manta/somatic module * fix strelka target bed thing * removing checksums should make this pass * Update modules/manta/somatic/main.nf Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com> * fix indentation Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>	2021-10-27 16:14:52 +02:00
Harshil Patel	4e9e732b76	Add strelka/somatic module (#866) ... * Add strelka/somatic module * Fill out meta.yml properly	2021-10-18 22:34:23 +01:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00