4 commits

Author	SHA1	Message	Date
Gisela Gabernet	f47c27edfb	Update checksum modules using human GTF (#900) ... * update test yml star align * update test yml stringtie merge * update star genomegenerate yml * update test yml rsem calculateexpression Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-10-26 23:09:04 +01:00
Harshil Patel	3c5492b4a3	Fix more version commands (#750) ... * Fix outstanding tests * Fix more version commands * Fix remaining modules	2021-09-28 06:56:27 +01:00
Jose Espinosa-Carrasco	217303f5c1	Add option -p to set the # of cpus on stringtie (#601) ... * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 15:38:40 +02:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00