Maxime U. Garcia
81aba5734c
Add modules bgziptabix ( #544 )
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* feat: add modules bgziptabix
* fix: add module to config
* fix: lint
* fix: tests
2021-06-25 10:52:02 +02:00
Jose Espinosa-Carrasco
95e02f913f
Update comments with new style ( #497 )
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* Update comment style on functions.nf files
* Update test main.nf comments
* Add meta for ggread
2021-05-12 14:56:46 +01:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
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* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Harshil Patel
7c2f10f591
Fix tabix/bgzip version command ( #407 )
2021-04-07 08:39:53 +01:00
Patrick Hüther
8a44258548
remove params section from meta.yml ( #282 )
2021-03-19 13:16:50 +01:00
Harshil Patel
3df3d671f2
Fix nf-core modules lint tests ( #275 )
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* Fix Conda definition bug
* Add process label
2021-03-16 17:16:47 +00:00
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ( #270 )
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* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
Harshil Patel
412172cda6
Merge pull request #180 from MaxUlysse/master_tabix_bgzip
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Replace bcftools/bgzip by tabix/bgzip
2021-02-16 23:32:23 +00:00
MaxUlysse
596bb18394
fix: rename file to input and gz, plus fix tests
2021-02-17 00:28:32 +01:00
MaxUlysse
6a147b8aaa
chores: replace bcftools/bgzip by tabix/bgzip cf #179
2021-02-16 19:11:36 +01:00
MaxUlysse
edf5fa3cf6
fix: merge bcftools/tabix and htslib/tabix into tabix/tabix
2021-02-16 18:27:13 +01:00
MaxUlysse
f660324508
chores: move file
2021-02-16 18:20:43 +01:00
