WackerO
6b011dd148
SVDB MERGE samtools version ( #1913 )
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* Started (again) to work on bgzipping SVDB_MERGE output
* Updated test yml
* SVDB_MERGE now bgzips output
* Fixed singularity, renamed tests in test.yml
* Added samtools version
Co-authored-by: Cloud User <centos@oskar-instance.novalocal>
2022-07-20 12:42:40 +02:00
WackerO
8214b73700
SVDB_MERGE bgzip ( #1910 )
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* Started (again) to work on bgzipping SVDB_MERGE output
* Updated test yml
* SVDB_MERGE now bgzips output
* Fixed singularity, renamed tests in test.yml
Co-authored-by: Cloud User <centos@oskar-instance.novalocal>
2022-07-20 10:54:06 +02:00
Ramprasad Neethiraj
313d76e005
update svdb version
2022-05-06 00:18:16 +02:00
Ramprasad Neethiraj
a973b68200
svdb update to 2.6.0 ( #1465 )
2022-03-30 14:50:27 +02:00
Ramprasad Neethiraj
49b18b1639
add stub to modules used in raredisease pipeline ( #1206 )
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* add stub section
* add stub for bcftools norm
* add stub to more modules
* fix expansionhunter tests
* revert changes -picard
* Update stub to write version no.s to a file
* add picard
* revert picard again
* add stubs to more modules
* fix bwamem2
* add bcftools view
* add stubs
* fix svdb query
* review suggestions
2022-03-28 17:48:39 +02:00
Ramprasad Neethiraj
cc671a5f3c
Update svdb/merge ( #1449 )
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* fix error
* fix input string
2022-03-27 14:15:43 +02:00
Ramprasad Neethiraj
5297d27fbf
update svdb to version 2.5.2 ( #1390 )
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* update svdb version and tests
* update link
2022-03-21 10:39:34 +01:00
Ramprasad Neethiraj
ee915a43e4
update svdb merge ( #1274 )
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* update svdb merge
* fix undefined variable error
* remove prio join in the script block
* fix error
* fix error again
* update tests and refactor
2022-02-24 09:49:30 +01:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config ( #1279 )
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* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Ramprasad Neethiraj
f44e6c74b4
Add svdb/merge ( #1233 )
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* nf-core create
* svdb merge module and test
* remove to-do from test.yml
* version
* update meta.yml
* add stub
* add when
2022-02-04 15:29:44 +01:00
Mahesh Binzer-Panchal
e20e57f90b
Add when: block ( #1261 )
2022-02-04 09:53:32 +01:00
Ramprasad Neethiraj
fc4bd3a2d2
Add svdb/query ( #1249 )
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* first commit
* add test data
2022-02-01 20:46:10 +01:00
