millironx/nf-core_modules
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14 commits

Author SHA1 Message Date
Matthias De Smet
9d0f03d96a
Update modules/elprep/merge/main.nf 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-04-29 15:07:09 +02:00
Matthias De Smet
d57024ddc0
Merge branch 'master' into tool/elprep-merge 2022-04-22 13:05:30 +02:00
Matthias De Smet
c17d1a7a7b
fix output glob (#1552) 2022-04-22 13:04:41 +02:00
Matthias De Smet
b1749445d7
fix output glob (#1551) 2022-04-22 12:50:17 +02:00
Matthias De Smet
fefffb9bb0 fix output glob 2022-04-22 12:36:32 +02:00
Matthias De Smet
2f6382168c update meta.yml 2022-04-22 11:51:54 +02:00
Matthias De Smet
c4072f274c fix formatting, fix code style 2022-04-22 11:39:22 +02:00
Matthias De Smet
4af5be8de3
Merge branch 'master' into tool/elprep-merge 2022-04-22 11:10:23 +02:00
Matthias De Smet
9e3daae8ef
New module: elprep filter (#1524) 
* first commit

* syntax fix

* fix input

* output sam during test for md5sum

* replace md5sum with contains

* add new test data, add extra in/outputs

* cli fixes

* fix outputs

* Update modules/elprep/filter/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/elprep/filter/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/elprep/filter/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* fix suggestions by @jfy133

* Bit more verbose explanation for bool vals

* define variables

* fix prettier

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-04-22 11:08:03 +02:00
Matthias De Smet
a1757897cb
Merge branch 'master' into tool/elprep-merge 2022-04-22 10:20:59 +02:00
Matthias De Smet
90b203d3e9
Tool/elprep split (#1533) 
* tool: elprep split

* fixes for testing

* fix tests

* fix test outputs

* create test-yaml

* fix suggestions by @jfy133

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-04-22 10:20:05 +02:00
Matthias De Smet
ad15d1b792 update label 2022-04-19 11:27:55 +02:00
Matthias De Smet
ccef7f8579 alignment 2022-04-19 11:26:01 +02:00
Matthias De Smet
0f7c046477 first commit 2022-04-13 12:51:17 +02:00