Alexander Ramos Díaz
9d5ad1894b
2012 bug related to species input in goattaxonsearch module ( #2099 )
...
* updated input for taxon
* updated test_single_species
* updated test file
* run prettier on test.yml
* updated label process_low
* restored lable process_single
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-09-23 10:58:40 -06:00
James A. Fellows Yates
90aef30f43
Set process label to process_single for modules with no task.cpus usage ( #2076 )
...
* Set process label to `process_single` for modules with no `task.cpus` usage
* Fix tests of 'borked' modules
* prettier
* More modules are single-threaded and can use process_single
* Adding process_single to hmmer/esl* modules
* Fix failing tests
* Prettier
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00
Alexander Ramos Díaz
37c6d4a1a1
Add module: goat/taxonsearch ( #1866 )
...
* first commit
* single taxon input
* added .tsv output
* input: single taxon or file with taxon identifiers
* updated input and output
* removed wrong tool description
* added tests
* ext.args = '-l -b'
* fixed wrong input names
* updated test file
* Update modules/goat/taxonsearch/main.nf
simple version output
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
* removed 'NO_FILE' from input definition
* added ! in if statement
* optional input: empty list
* successful updated test
* added test with file
* remove blank spaces in include {}
* added test with taxa file
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
2022-08-18 08:34:58 -06:00
