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2 commits

Author SHA1 Message Date
James A. Fellows Yates
a0443e2c54
Fixes incorrectly quoted tags (#2113) 
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Update main.nf

* Remove now unnecessary input channel

* Remove unused channel from tests

* Update hAMRonization to 1.1.1 and add hAMRonization farGene

* Fix hamronizatio ntests

* Prettier

* Fix fargene linting

* Correct file

* Fix fargene output

* Apply suggestions from code review

Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>

* Fix summarise tests

* Prettier

* Fix incorrect quotes in tags

Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
 2022-09-27 20:37:56 +01:00
Adam Talbot
e7845e2472
1976 msisensor2 (#1977) 
* msisensor2: Add msisensor2 module

* msisensor2/scan module added

* msisensor2 tests added

Changes:
 - tests added for msisensor2 from the msisensor2 github repo. No
 available tests from NF-Core test repo.

Relates to #1976

* msisensor2 slight bump in stuff

* msisensor2: Replaced spelling of 'tumour' with 'tumor'

* msisensor2: fix linting, testing and containers

Relates to #1976

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
 2022-09-05 13:00:18 +02:00