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4 commits

Author SHA1 Message Date
James A. Fellows Yates
90aef30f43
Set process label to process_single for modules with no task.cpus usage (#2076)
* Set process label to `process_single` for modules with no `task.cpus` usage

* Fix tests of 'borked' modules

* prettier

* More modules are single-threaded and can use process_single

* Adding process_single to hmmer/esl* modules

* Fix failing tests

* Prettier

Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 11:54:47 +02:00
Matthieu Muffato
c736d26b7e
bedToBigBed AutoSql option (#1981)
* Added missing "ucsc" tags (as per the convention)

* Added support for the -as input file

* Added a test
2022-09-09 09:27:47 +01:00
Matthieu Muffato
11cf45043c
Newer container version because the previous one is misconfigured (#1961)
The previous one raises the warning
> WARNING: Skipping mount /path/to/singularity-v3.9.0/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-08-22 21:01:13 +01:00
Matthieu Muffato
458f4396a6
Added support for task.ext.args (#1954)
* Added support for `task.ext.args`

* Renamed the module since it can now process any sort of BED file
2022-08-16 12:05:25 +01:00
Renamed from modules/ucsc/bed12tobigbed/main.nf (Browse further)