Commit graph

7 commits

Author SHA1 Message Date
Robert A. Petit III
73a09850fb
Update agrvate version (#970)
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2021-11-15 16:06:02 +01:00
Harshil Patel
49da864287
Update versions key in meta.yml for all modules (#787) 2021-10-03 08:20:26 +01:00
Harshil Patel
7b3315591a
Remove def software lines and emit versions channel as plural (#780)
* Remove def software line

* Replace version with versions in emit statement

* Fix default software names
2021-10-01 14:04:56 +01:00
Harshil Patel
43c2779258
Fix version commands (#749)
* Fix version commands

* Fix version commands: again
2021-09-27 22:10:37 +01:00
Gregor Sturm
906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00
Robert A. Petit III
8e9d6cd5e4
Update agrvate to latest version (#728)
The new version of agrvate fixes an issue where sample names with a `.` (dot) in there names caused the name to be truncated

https://github.com/VishnuRaghuram94/AgrVATE/releases/tag/v1.0.1

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-21 20:28:53 +01:00
Abhinav Sharma
1840289068
module for agrvate (#693)
* initiate agrvate module

* remove todos [ci skip]

* remove todos and fix containers [ci skip]

* ready for testing


Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-16 12:42:23 +02:00