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89 commits 30 branches 0 tags 142 MiB
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12 commits

Author SHA1 Message Date
Phil Ewels
c627da09cc
Merge pull request #27 from FelixKrueger/fastqc 
FastQC module is working and now accepting arguments
 2020-07-11 13:23:41 +02:00
FelixKrueger
f8916eb9b5 FastQC module is working and now accepting arguments 2020-03-16 14:17:38 +00:00
Phil Ewels
c8ceddfe77 Tidying, add samtools and trim_galore 2020-03-06 14:33:48 +00:00
Phil Ewels
198e9a85eb FastQC: add dockerfile and environment.yml 2020-03-06 14:04:18 +00:00
Phil Ewels
c77ea13d35 Fixed FastQC tests with submodule 2019-12-06 10:15:49 +01:00
Phil Ewels
93f7b26aa2 Use submodules for test data 2019-12-06 09:24:33 +01:00
Phil Ewels
eb41e5ebba FastQC: actually run a test 2019-12-05 22:11:12 +01:00
Phil Ewels
acc4eb0054 GitHub actions - run nextflow in a docker image 2019-12-05 15:57:32 +01:00
Phil Ewels
af766a9cc7 Added TrimGalore 2019-12-05 15:53:38 +01:00
Phil Ewels
97fbd32644 Added samtools sort + index 
Added container to FastQC
 2019-12-05 15:36:35 +01:00
Phil Ewels
5e4c023edd Start work on FastQC module files 2019-12-05 15:18:09 +01:00
Phil Ewels
4582ab344c Add GitHub Actions, put FastQC in to a directory 2019-12-05 14:52:43 +01:00