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6 commits

Author SHA1 Message Date
Lucpen
ef585046a0
feat added vcflib/vcfbreakmulti module (#2134)
* feat added vcflib/vcfbreakmulti module

* fix comments review

* Update modules/vcflib/vcfbreakmulti/main.nf

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>

* Update modules/vcflib/vcfbreakmulti/main.nf

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>

* fix change required by reviewer

* fix commiting pytest_modules.yml

* fix version

* fix version_

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

* fix undid previous commit

* fix test

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>
Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
2022-09-30 16:57:18 +02:00
Harshil Patel
682f789f93
Bump tool versions for modules required in viralrecon (#1859)
* Bump tool versions for modules required in viralrecon

* Fix all the tests

* Fix Prettier lint

* Remove empty md5sums
2022-07-07 14:48:04 +01:00
Mahesh Binzer-Panchal
233fa70811
Update manual versioning (#1813) 2022-06-27 10:35:41 +02:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Mahesh Binzer-Panchal
e20e57f90b
Add when: block (#1261) 2022-02-04 09:53:32 +01:00
Harshil Patel
280712419d
Add new vcflib/vcfuniq module (#1208)
* Add new vcflib/vcfuniq module

* Rename module from vcfutils to vcfuniq

* Fix tests

* Compress output by default

* Fix ECLint
2022-01-14 18:18:11 +00:00