* inital commit
* added meta.yaml info
* add initial logic for featurecounts test
* add args and change SE/PE to strandedness for featurecounts test
* added tests to pytest
* added test.yml
* removed GTF flag in options
* corrected test meta params
* meta yaml corrected tool info
* update test.yml
* fix lint errors meta.yml
Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr>
* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
