millironx/nf-core_modules
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8 commits

Author SHA1 Message Date
Lucpen
baa2845d28
Included args option in picard AddOrReplaceReadGroups (#1973) 
feat included args option in picard addorreplacereadgroups
 2022-08-25 11:06:02 +01:00
Harshil Patel
682f789f93
Bump tool versions for modules required in viralrecon (#1859) 
* Bump tool versions for modules required in viralrecon

* Fix all the tests

* Fix Prettier lint

* Remove empty md5sums
 2022-07-07 14:48:04 +01:00
Matthias De Smet
63db63757c bump picard versions 2022-05-30 10:15:40 +02:00
Matthias De Smet
20ebb89ff9 update to long args 2022-04-29 10:52:40 +02:00
Matthias De Smet
00467ac64a update command line syntax for all tools 2022-04-29 07:57:11 +02:00
Matthias De Smet
6ca6de91f8 bump picard version across the board 2022-04-29 07:47:24 +02:00
Edmund Miller
f080015754
Prettier (#1405) 
* style: Add prettier config files

* build: Add prettier vscode extension

* ci: Replace markdownlint and yamllint with prettier

* style: Run prettier

* style: Use indent of 2 for markdown as well

https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358

* style: Fix indent

* style: Let editorconfig take over tab widths

* style: yaml => yml

* ci: Run prettier once

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
 2022-03-18 14:27:50 +01:00
Sateesh
a0d91e4a93
Picard addorreplacereadgroups (#1305) 
* add picard-addorreplacereadgroups

* add picard_addorreplacereadgroups

* add new line to main.nf

* remove trailing whitespaces

* remove trailing whitespaces

* change to output in test yml

* add when directive

* picard 2.26.10 -> 2.26.9

* picard 2.26.10 -> 2.26.9 test yml

Co-authored-by: Peri <rrx8@cdc.gov>
Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
 2022-02-18 19:59:06 -07:00