Charles Plessy
894349b9b5
Fix 459 ( #534 )
...
* Update test data names.
Closes : #459
Thanks: @FriederikeHanssen
(`samtools` tests are already fixed by another commit)
* Fix file names in tests.
The update of test data name required changes in the test yml files.
I also updated the `bismark/summary/main.nf` file to get its data
from the `params.test_data` map.
2021-06-14 12:24:59 +01:00
Harshil Patel
5e18e36895
Update and check tests are running for all modules ( #420 )
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* Fixes for PR 371
* Fix tags
* Add md5sum
* Add md5sums for stringtie
* Fix tests for modules where subtool = build
* Fix pytest_software name conflicts
* Change _ to / in test.yml tags
* Nope...that didnt work
* Fix sequenzautils/bam2seqz tests
2021-04-09 13:47:05 +01:00
kevbrick
fead37d57a
Add module: nf-core hackathon #207 : new module: msisensor/msi ( #343 )
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* Add module: nf-core hackathon #207 : new module: msisensor/msi
* Add module: nf-core hackathon #207 : new module: msisensor/msi
* Fix 4-spacing issues (caught in PR linting)
* Code review fixes & update configs
* Code review: remove stray echo
* Code review: Add msisensor modules
* Slashes to underscores to get tests to run on github
* Update software/msisensor/scan/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/msisensor/scan/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/msisensor/msi/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/msisensor/msi/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Add all outputs to meta.ymls
* Fixes from code review
* Fixes from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-25 16:46:00 -04:00
