4 commits

Author	SHA1	Message	Date
Jose Espinosa-Carrasco	cde1d827f9	Fix yml ver (#756) ... * Fix kallisto index tests * Fix nanoplot * Fix kallistobustools * Fix pairix * Fix plasmidid * Fix pbccs * Fix raxmlng * Fix prokka * Fix shovill * Fix typo * Deleted workflow by mistake added again	2021-09-28 18:33:07 +02:00
Gregor Sturm	906577873b	Bulk update modules to use versions.yml (#739) ... * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-09-27 09:41:24 +01:00
Harshil Patel	c5235a983d	nf-core modules bump-versions for all modules (#630) ... * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests	2021-07-28 09:10:44 +01:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00