11 commits

Author	SHA1	Message	Date
Matthias De Smet	d57024ddc0	Merge branch 'master' into tool/elprep-merge	2022-04-22 13:05:30 +02:00
Matthias De Smet	c17d1a7a7b	fix output glob (#1552)	2022-04-22 13:04:41 +02:00
Matthias De Smet	b1749445d7	fix output glob (#1551)	2022-04-22 12:50:17 +02:00
Matthias De Smet	fefffb9bb0	fix output glob	2022-04-22 12:36:32 +02:00
CMGG ICT Team	8dad38afc7	fix test.yml	2022-04-22 11:35:14 +02:00
Matthias De Smet	4af5be8de3	Merge branch 'master' into tool/elprep-merge	2022-04-22 11:10:23 +02:00
Matthias De Smet	9e3daae8ef	New module: elprep filter (#1524) ... * first commit * syntax fix * fix input * output sam during test for md5sum * replace md5sum with contains * add new test data, add extra in/outputs * cli fixes * fix outputs * Update modules/elprep/filter/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/elprep/filter/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/elprep/filter/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * fix suggestions by @jfy133 * Bit more verbose explanation for bool vals * define variables * fix prettier Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-04-22 11:08:03 +02:00
Matthias De Smet	a1757897cb	Merge branch 'master' into tool/elprep-merge	2022-04-22 10:20:59 +02:00
Matthias De Smet	90b203d3e9	Tool/elprep split (#1533) ... * tool: elprep split * fixes for testing * fix tests * fix test outputs * create test-yaml * fix suggestions by @jfy133 Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-04-22 10:20:05 +02:00
Matthias De Smet	ccef7f8579	alignment	2022-04-19 11:26:01 +02:00
Matthias De Smet	0f7c046477	first commit	2022-04-13 12:51:17 +02:00