Matthias De Smet
44baf85bcc
snapaligner: improve index detection ( #1836 )
...
* improve index detection
* fix escaping
2022-06-30 12:19:46 +02:00
Matthias De Smet
253f8c1b0e
snapaligner: fix quotes ( #1835 )
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Fix quotes
2022-06-30 11:15:15 +02:00
Matthias De Smet
e2755cb039
add extra output from snap aligner ( #1826 )
2022-06-29 12:37:38 +02:00
Matthias De Smet
3930ba227b
merge snapaligner modes into one
2022-05-06 14:10:44 +02:00
Matthias De Smet
b59713e623
Tool/snap aligner single ( #1510 )
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* first commit
* add tool
* fix tests
* fix indents
* Update modules/snapaligner/single/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* fix comments
* fix versions
* prettier
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-12 11:20:35 +02:00
Matthias De Smet
09125979cc
Tool/snap aligner paired ( #1509 )
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* first commit
* edit main.nf
* edit tests
* run prettier
* fix test
* indent script
* Update modules/snapaligner/paired/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/snapaligner/paired/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* fix version nr
* update meta
* fix versions
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-12 11:02:10 +02:00
Matthias De Smet
f57f085912
new tool snap-aligner/index ( #1506 )
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* add snapaligner/index
* output fixes
* fix outputs
* fix tests
* update inputs
* fix more bugs
* fix linting
* Update modules/snapaligner/index/main.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/snapaligner/index/main.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* fix comments
* fix indents
* fix escaping
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-08 14:41:08 +02:00
