Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
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* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Harshil Patel
242fdb2f73
Version bumps and minor module updates ( #406 )
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* Version bumps and minor module updates
* Fix Pangolin tests
* Fix SPAdes tests
* stageAs @phue
2021-04-06 13:38:41 +01:00
Patrick Hüther
8a44258548
remove params section from meta.yml ( #282 )
2021-03-19 13:16:50 +01:00
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ( #270 )
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* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
Kevin Menden
0218824b86
add task.cpus to pangolin ( #263 )
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* add task.cpus to pangolin
* bumped pangolin to v2.3.2
2021-03-10 09:02:23 +01:00
drpatelh
dcc580e4fb
Remove Conda build ids for all modules
2021-02-16 23:58:23 +00:00
drpatelh
e63279e6a2
Pin pangoLearn version
2021-02-10 10:28:27 +00:00
drpatelh
b03846600d
Tidy up
2021-02-09 23:26:45 +00:00
drpatelh
6795fe04b8
Rename output channel
2021-02-09 23:26:18 +00:00
drpatelh
c0926b0b6b
various - add build to conda definition
2021-02-03 09:19:46 +00:00
Harshil Patel
59e3e8202b
Update software/pangolin/main.nf
2021-01-29 11:43:42 +00:00
kevinmenden
a22f430674
updated input description
2021-01-29 12:34:23 +01:00
Kevin Menden
8f2f936cd4
Apply suggestions from code review
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 12:33:37 +01:00
kevinmenden
69a41cadbc
added pangolin module
2021-01-29 11:03:54 +01:00
