5 commits

Author	SHA1	Message	Date
Edmund Miller	a3684d9594	Lint modules ci (#389) ... * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-04-08 09:10:52 +01:00
Jose Espinosa-Carrasco	13bd67ed8a	Fix some module test after adapting test config approach (#379) ... * Fix paths for bowtie2/build_test * Fix paths for bowtie2/align * Fix paths for bwameth/index * Fix paths for bwameth/align * Fix paths for multiqc tests	2021-03-24 18:29:41 +00:00
Harshil Patel	acb1a12a56	Re-organise all test data (#354) ... * Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint	2021-03-24 09:53:41 +00:00
Jose Espinosa-Carrasco	ee90e7af77	Add default output dir for modules that create indices, updated (#336) ... * Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting	2021-03-23 17:55:01 +00:00
Jose Espinosa-Carrasco	74ff11b07b	Fix bowtie builds (#273) ... * Fix bowtie build test * Forgot to delete old bowtie_build * Fix bowtie2 build tests * Add initOptions include on hisat2 extractsplicesites	2021-03-15 15:39:42 +01:00