5 commits

Author	SHA1	Message	Date
James A. Fellows Yates	15c7190e22	Deeparg singularity container fix 2 (#1406) ... * fix: remove left-over unnecessary code * Switch to more portable solution for singularity container issue by using bind paths * Fix input collision of dummy files * Repalce dummy with which bash * Remove dummy usage from tests * Apply suggestions from code review * Fix singularity typo	2022-03-18 16:21:55 +01:00
James A. Fellows Yates	f469045a95	Fix DeepARG depenency issue with singularity containers (#1397) ... * fix: remove left-over unnecessary code * Adds --fakeroot option for singularity usage with DeepARG as workaround for broken conda dependency * Update modules/deeparg/downloaddata/main.nf Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * Update modules/deeparg/predict/main.nf Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * Apply suggestions from code review * Update main.nf * Update main.nf * Update main.nf * Update main.nf * Go back to original logic Co-authored-by: Moritz E. Beber <midnighter@posteo.net>	2022-03-17 13:08:51 +01:00
Mahesh Binzer-Panchal	e20e57f90b	Add when: block (#1261)	2022-02-04 09:53:32 +01:00
James A. Fellows Yates	fc1e694e6e	fix: remove left-over unnecessary code (#1235)	2022-01-27 09:38:06 +01:00
James A. Fellows Yates	c3bacb9fdd	Add deeparg (#1234) ... * Add deeparg download data * Tweak downloaddata test.yml * Add deeparg tests * Apply suggestions from code review * Fix output file paths in test * Fix tests again md5sum to string	2022-01-26 15:19:16 +01:00