3 commits

Author	SHA1	Message	Date
Harshil Patel	e4df336294	Add hifiasm module (#596) ... * Add hifiasm module * Tidy up module * Add pacbio files to test_data.config	2021-07-20 21:50:22 +01:00
Johnathan D	2e619add87	Add samtools ampliconclip (#590) ... * created template for `samtools/ampliconclip` (#584) * All tests passing (#584) * Linting fixed (#584) * Final linting fixed (#584) * Optional output flags moved to `input` (#584) * typo fix (#584) * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-20 21:31:31 +01:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00