Matthias Hörtenhuber
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e745e167c1
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Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-02-15 11:15:27 +00:00 |
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Sébastien Guizard
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c25c3fe466
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Update: uLTRA (#1081)
* 👌 IMPROVE: Update .gitignore
* 📦 Add ultra module
* 👌 IMPROVE: Update test input
* 👌 IMPROVE: Update and clean code
- Update to last versions.yml file
- Update meta.yml
- Correct typos
* 👌 IMPROVE: Update output channels + Rename following subtool
* 👌 IMPROVE: Remove old ultre files
* 👌 IMPROVE: Update of pytest_modules.yml
* 👌 IMPROVE: Update test.yml
* 👌 IMPROVE: Keep md5sum as much as possible
* 👌 IMPROVE: Remove old ultra files
* 👌 IMPROVE: Update of pytest_modules.yml
* 👌 IMPROVE: Update test.yml
* 👌 IMPROVE: Keep md5sum as much as possible
* 🐛 Fix: add unsaved modifications
* 🐛 FIX: Remove one inconstant md5sum
* 🐛 FIX: Grab software name using ${getSoftwareName(task.process)}
* 🐛 FIX: Remove md5sums for pickle files (not constant).
* Update modules/ultra/pipeline/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/ultra/pipeline/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* 👌 IMPROVE: update output directory, update meta.yml
* 👌 IMPROVE: Use modules to gunzip and sort gtf
* 🐛 FIX: Set up channel correctly
* 👌 IMPROVE: Remove pickles files and databases
Those data might be useful in a debugging purpose.
* Apply suggestions from code review
* Update main.nf
* 🐛 FIX: Update uLTRA to version 0.0.4.1 + remove $(pwd)
* 👌 IMPROVE: Sort tags in test.yml
* align order of input between main.nf and meta.yml. Add ksahlin as co-author (he did update his package to overcome the pwd-problem
* Update main.nf
* Update main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Lasse Folkersen <lassefolkersen@gmail.com>
Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
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2021-11-21 13:00:53 +00:00 |
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Sébastien Guizard
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4a9bfec61d
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New module: Ultra (#871)
* 👌 IMPROVE: Update .gitignore
* 📦 Add ultra module
* 👌 IMPROVE: Update test input
* 👌 IMPROVE: Update and clean code
- Update to last versions.yml file
- Update meta.yml
- Correct typos
* 👌 IMPROVE: Update output channels + Rename following subtool
* 👌 IMPROVE: Remove old ultre files
* 👌 IMPROVE: Update of pytest_modules.yml
* 👌 IMPROVE: Update test.yml
* 👌 IMPROVE: Keep md5sum as much as possible
* 👌 IMPROVE: Remove old ultra files
* 👌 IMPROVE: Update of pytest_modules.yml
* 👌 IMPROVE: Update test.yml
* 👌 IMPROVE: Keep md5sum as much as possible
* 🐛 Fix: add unsaved modifications
* 🐛 FIX: Remove one inconstant md5sum
* 🐛 FIX: Grab software name using ${getSoftwareName(task.process)}
* 🐛 FIX: Remove md5sums for pickle files (not constant).
* Update modules/ultra/pipeline/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/ultra/pipeline/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* 👌 IMPROVE: update output directory, update meta.yml
* 👌 IMPROVE: Use modules to gunzip and sort gtf
* 🐛 FIX: Set up channel correctly
* 👌 IMPROVE: Remove pickles files and databases
Those data might be useful in a debugging purpose.
* Apply suggestions from code review
* Update main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-11-15 15:57:58 +00:00 |
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