4 commits

Author	SHA1	Message	Date
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00
Jose Espinosa-Carrasco	95e02f913f	Update comments with new style (#497) ... * Update comment style on functions.nf files * Update test main.nf comments * Add meta for ggread	2021-05-12 14:56:46 +01:00
Harshil Patel	dce27b8102	Update functions.nf to be more flexible for publishing by meta keys (#423) ... * Update functions.nf * Replace saveAs line in module main script * Add spacing for ECLint	2021-04-09 17:23:56 +01:00
sruthipsuresh	983ba000c1	New modules: Fgbio callmolecularconsensusreads and sortbam (#352) ... * Added fgbio callmolecularconsensusreads and sortbam modules * Fixed naming issue in meta.yml * fix: test.yml and config lint * Revert "fix: test.yml and config lint" This reverts commit 0453bc3a8dc3dab6997442a4349ee2241adcc380, which caused the sortbam tests to fail. * style: Fix test names * style: Remove trailing whitespace * fixed test.yml * fix: test data in sortbam * fix: data format * fix: test data for callmolecularconsensusreads * Corrected with updated test data * Apply suggestions from code review Applied changes from code review, mainly syntactical changes Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Sruthi Suresh <sps180004@ganymede.utdallas.edu> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-03-28 20:38:50 +01:00