Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
Jose Espinosa-Carrasco
95e02f913f
Update comments with new style ( #497 )
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* Update comment style on functions.nf files
* Update test main.nf comments
* Add meta for ggread
2021-05-12 14:56:46 +01:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
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* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Yuk Kei Wan
16e8d21477
Nanoplot and sequencing_summary.txt for Nanopore test data ( #364 )
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* add nanoplot
* add Nanopore 100 read subset bam and fastq
* add nanoplot module and sequencing_summary.txt
* Update pytest_software.yml
* Update main.nf
* test directory path
* testing one output file
* Update main.nf
* fix typo
* remove path to test outputs (it worked locally)
* use test_data.config in test
* add meta.yml
* allowing either summary.txt or fastq.gz inputs
* fix linting and test.yml
* test whether github check can catch the output
* add summary.txt test output paths
* check Nanoplot-report.html output
2021-04-09 08:31:38 +01:00