Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
Jose Espinosa-Carrasco
95e02f913f
Update comments with new style ( #497 )
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* Update comment style on functions.nf files
* Update test main.nf comments
* Add meta for ggread
2021-05-12 14:56:46 +01:00
Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
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* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Anthony Underwood
6927f1d086
New Snpsites module ( #416 )
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* new gubbins module
* new gubbins module
* new gubbins module
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gubbins/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* new gubbins module
* Update tests/config/test_data.config
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/software/gubbins/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* new gubbins module
* new gubbins module
* new snpsites module
* new snpsites module
* new snpsites module
* new snpsites module
* adding fasttree module
* correct trailing whitespace
* using sarscov2 as a test dir
* use sars-cov-2 alignment
* remove old test alignment
* new snpsites module
* new snpsites module
* new snpsites module
* updated test file names
* new snpsites module
* revert to gubbins test on upstream
* add new lines
* renove whitespace
* Apply suggestions from code review
Co-authored-by: avantonder <avt@sanger.ac.uk>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: avantonder <ajv37@cam.ac.uk>
2021-04-09 08:00:33 +01:00
