5 commits

Author	SHA1	Message	Date
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00
Mark-S-Hill	889465cb2b	update test data paths (#373) ... * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-03-24 18:14:11 +00:00
Harshil Patel	acb1a12a56	Re-organise all test data (#354) ... * Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint	2021-03-24 09:53:41 +00:00
Kevin Menden	a552d97849	Exchange VCF data by sarscov2 data (#261) ... * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix	2021-03-09 10:04:08 +01:00
JoseEspinosa	5313698705	Add bcftools merge module	2021-02-13 00:08:57 +01:00