Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
Harshil Patel
b3278a1e63
Modules TLC ( #551 )
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* Modules TLC
* Fix all the tests
2021-07-01 16:13:01 +01:00
Harshil Patel
5e18e36895
Update and check tests are running for all modules ( #420 )
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* Fixes for PR 371
* Fix tags
* Add md5sum
* Add md5sums for stringtie
* Fix tests for modules where subtool = build
* Fix pytest_software name conflicts
* Change _ to / in test.yml tags
* Nope...that didnt work
* Fix sequenzautils/bam2seqz tests
2021-04-09 13:47:05 +01:00
JJ
e50a525715
gatk4 markduplicates ( #356 )
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* new module gatk4/markduplicates
* add tests
* add gatk4_markduplicates entry in pytest_software.yml
* Update software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/software/gatk4/markduplicates/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Apply suggestions from code review
* Fix EC lint
* Update md5sum
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-26 23:25:40 +00:00
