Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure ( #567 )
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* Update README
* Rename pytest_software.yml to pytest_modules.yml
* Rename main software directory to modules
* Remove deprecated modules
* Rename tests software to modules
* Replace paths for tests in pytest_modules.yml
* Replace software with modules in Github Actions
* Replace software with modules in main.nf tests
* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00
Kevin Menden
043a7d1e3c
remove deprecated test tags ( #440 )
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* remove deprecated test tags
* fix bowtie, gatk4/applybsqr
* fix gatk4 baserecalibrator
* fixed shovill
* fixed yara/mapper
* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
Robert A. Petit III
c9256616b9
update tests for new config ( #384 )
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* update tests for new config
* fix quast, update more
* more updates!
* more tests updated
* fix tests, added tabix gff3.gz
* Delete main.nf
Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 20:22:06 +01:00
Harshil Patel
acb1a12a56
Re-organise all test data ( #354 )
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* Re-organise all test data
* Fix ECLint
* Fix ECLint agaaainn
* Now is not the time EClint
2021-03-24 09:53:41 +00:00
Jose Espinosa-Carrasco
cfa8f64c4f
Adding unicycler module ( #307 )
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* Adding unicycler module
* Do not forget to change default keywords on meta.yml
2021-03-22 18:14:24 +01:00