557 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
drpatelh	f367f9ef69	Add main test script	2020-08-07 12:56:39 +01:00
drpatelh	375af1428e	Minor change	2020-08-07 12:38:10 +01:00
drpatelh	a6fc702c8b	Update bwa index docs	2020-08-07 12:38:01 +01:00
Harshil Patel	ad4151703f	Merge pull request #60 from drpatelh/master ... Add docs and tests for TrimGalore!	2020-08-07 12:27:43 +01:00
drpatelh	9f4192d433	Add TrimGalore GitHub Actions test	2020-08-07 12:21:47 +01:00
drpatelh	36f2544c36	Add single_end input file for testing	2020-08-07 12:19:47 +01:00
drpatelh	6522b04ee3	Remove old code	2020-08-07 12:19:28 +01:00
drpatelh	30256d8e81	Update tests	2020-08-07 12:18:53 +01:00
drpatelh	2c0f552908	Add output files	2020-08-07 12:18:43 +01:00
drpatelh	4df72f0396	Update nextflow.config	2020-08-07 12:14:12 +01:00
drpatelh	f32950d0f2	Update docs for trimgalore	2020-08-07 12:10:42 +01:00
Harshil Patel	7c900e2d17	Merge pull request #59 from drpatelh/master ... Refine module TEMPLATE	2020-08-07 11:41:56 +01:00
drpatelh	a63897ee9c	Add input output test folders	2020-08-07 11:40:51 +01:00
drpatelh	d63982b41e	Update README	2020-08-07 11:38:48 +01:00
drpatelh	3a4fbf36ae	Add test	2020-08-07 11:31:07 +01:00
drpatelh	b1381bb577	Add TODOs	2020-08-07 11:30:55 +01:00
drpatelh	fee1687215	Add template example to README	2020-08-07 11:30:43 +01:00
drpatelh	e657363900	Add nextflow config to folder	2020-08-07 10:59:05 +01:00
drpatelh	bdfe187440	Add TODO comments	2020-08-07 10:58:36 +01:00
drpatelh	9296897009	Define options as input	2020-08-07 10:58:24 +01:00
Harshil Patel	5af5fc395e	Merge pull request #58 from drpatelh/master ... Get tests working for FastQC	2020-08-07 10:11:53 +01:00
drpatelh	6255d9b00c	Fix markdownlint	2020-08-07 10:10:12 +01:00
drpatelh	49e37cb22c	Add profile docker	2020-08-07 10:07:20 +01:00
drpatelh	4f76bb6b03	Add nextflow.config	2020-08-07 10:06:45 +01:00
drpatelh	7efd46b489	Add nextflow.config	2020-08-07 09:59:19 +01:00
drpatelh	fab020461b	Add -with-docker	2020-08-07 09:44:16 +01:00
drpatelh	111b1505fa	Add basedir	2020-08-07 09:40:02 +01:00
drpatelh	75e7e1573c	Add output files	2020-08-07 09:32:28 +01:00
drpatelh	754fad7c8e	Update output paths	2020-08-07 09:32:03 +01:00
drpatelh	268c56c20d	Update README	2020-08-07 09:31:54 +01:00
drpatelh	b0abd14135	Update tests	2020-08-07 09:31:27 +01:00
drpatelh	0466d5249b	Update docs	2020-08-07 00:50:49 +01:00
drpatelh	cb08a7326a	Change NF version	2020-08-07 00:38:56 +01:00
drpatelh	f014e67de6	Remove old outputs	2020-08-07 00:37:13 +01:00
drpatelh	2c7abca088	Move unit tests to deprecated	2020-08-07 00:36:05 +01:00
drpatelh	16d3ad5d06	Adapt script for meta	2020-08-07 00:35:34 +01:00
Harshil Patel	526ad8a457	Merge pull request #56 from drpatelh/master ... Final README updates	2020-08-06 16:33:33 +01:00
drpatelh	a0ca7b1738	Update meta.yml link	2020-08-06 16:30:32 +01:00
drpatelh	c98b32dfa8	Add link to functions file	2020-08-06 16:26:57 +01:00
drpatelh	70607cf5e2	Adjust spacing	2020-08-06 16:19:31 +01:00
drpatelh	b244160e78	Fix indent	2020-08-06 16:18:16 +01:00
drpatelh	bca0d598bf	Add more links	2020-08-06 16:14:36 +01:00
drpatelh	28143c32fd	Add links	2020-08-06 16:12:06 +01:00
drpatelh	5e32585acf	Fix markdownlint	2020-08-06 16:08:52 +01:00
drpatelh	bd137343f0	Remove spaces	2020-08-06 16:07:10 +01:00
drpatelh	14fcbc52f1	Update testing section	2020-08-06 16:04:19 +01:00
Harshil Patel	f10b7810f1	Merge pull request #55 from drpatelh/master ... Add module template	2020-08-06 15:35:11 +01:00
drpatelh	b3e3e43089	Update README	2020-08-06 15:34:44 +01:00
drpatelh	e2b47a6fa3	Add software requirements section	2020-08-06 15:22:32 +01:00
drpatelh	21efc24299	Re-write requirements	2020-08-06 14:50:09 +01:00