4 commits

Author	SHA1	Message	Date
James A. Fellows Yates	90aef30f43	Set process label to process_single for modules with no task.cpus usage (#2076) ... * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>	2022-09-19 11:54:47 +02:00
Daniel Lundin	b6f18f8733	eslreformat: descriptive suffix (#2081)	2022-09-19 09:49:00 +02:00
Daniel Lundin	885e724e07	Add postprocessing option to hmmer/eslreformat (#2061) ... * Add postprocessing option to hmmer/eslreformat * Update tests/modules/hmmer/eslreformat/nextflow.config Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update modules/hmmer/eslreformat/main.nf Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>	2022-09-14 18:43:50 +02:00
Daniel Lundin	8bc5236371	Add hmmer/eslreformat (#2009) ... * Created hmmer/eslalimask from template * esl-alimask module with --rf-is-mask test case * Add optional file output * Add hmmer to test name * Move from process_single to process_low * Test for versions.yml, plus content * Prettier * Avoid gzipping input alignment * hmmer/eslreformat from template * Started on main.nf * meta.id to prefix * Continued work * Fix version string so it's from *this* tool * hmmer/eslreformat * Prettier * Get tests/config/pytest_modules.yml back * Delete extra hmmer/eslalimask in pytest_modules.yml * More prettier * Fix path to versions.yml in test * Remove 'format' param * Fix problems with format param deletion * Document format param	2022-09-05 15:21:09 +02:00