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Author	SHA1	Message	Date
Mahesh Binzer-Panchal	c8ffecfe86	Merge branch 'master' into kat_hist	2022-05-24 13:57:45 +02:00
Matthias De Smet	c51c047b2e	Merge branch 'master' into update/mosdepth	2022-05-24 13:50:22 +02:00
Harshil Patel	f9aa1e0bdb	Merge pull request #1692 from SusiJo/cnvkit/reference ... Changed tag of module	2022-05-24 12:49:15 +01:00
Matthias De Smet	a2a8e09762	Update modules/mosdepth/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-24 13:45:52 +02:00
Matthias De Smet	5bc2d419a9	fix fail test	2022-05-24 13:23:00 +02:00
Thiseas C. Lamnidis	6d04395c3c	Merge branch 'master' into sexdeterrmine	2022-05-24 13:17:37 +02:00
Mahesh Binzer-Panchal	afb5f226e6	Merge branch 'master' into kat_hist	2022-05-24 13:06:31 +02:00
Matthias De Smet	858cbe80c6	add must fail test	2022-05-24 12:43:49 +02:00
Matthias De Smet	7e777c6626	add error is is provided twice	2022-05-24 12:25:31 +02:00
Matthias De Smet	b5850fd471	add stub	2022-05-24 12:16:03 +02:00
Harshil Patel	393f23274d	Merge branch 'master' into cnvkit/reference	2022-05-24 11:14:50 +01:00
Harshil Patel	29a4f112be	Update main.nf	2022-05-24 11:14:32 +01:00
Matthias De Smet	01fb8851c3	mosdept: cram compatiblility	2022-05-24 11:47:58 +02:00
Harshil Patel	300e607a61	Merge pull request #1689 from drpatelh/umitools ... Update umitools/dedup module to make --output-stats optional	2022-05-24 09:24:03 +01:00
Harshil Patel	ec141dba08	Merge branch 'master' into umitools	2022-05-24 09:23:20 +01:00
SusiJo	5db94ea0ee	changed tag of module	2022-05-24 10:17:41 +02:00
Ramprasad Neethiraj	b4982ff6e3	Merge branch 'master' into rhocall	2022-05-24 09:41:30 +02:00
SusiJo	0e1bbe5b4a	Merge pull request #1690 from SusiJo/cnvkit_reference ... Add cnvkit/reference module	2022-05-24 09:08:13 +02:00
SusiJo	0f0d555f96	Merge branch 'master' into cnvkit_reference	2022-05-24 08:03:44 +02:00
SusiJo	61ebf89fb8	Merge pull request #1680 from SusiJo/cnvkit_bam ... Modified cnvkit/batch module: cram2bam conversion	2022-05-24 08:03:26 +02:00
SusiJo	0708f343de	Merge branch 'master' into cnvkit_bam	2022-05-24 07:49:51 +02:00
SusiJo	50128b0c86	Merge branch 'master' into cnvkit_reference	2022-05-24 07:49:44 +02:00
SusiJo	361b3a458b	Merge pull request #1686 from SusiJo/cnvkit/antitarget ... Added module cnvkit/antitarget	2022-05-24 07:48:55 +02:00
SusiJo	1451d62be4	rm md5sums for empty files	2022-05-24 07:38:53 +02:00
SusiJo	63c038ad68	Merge branch 'nf-core:master' into cnvkit_bam	2022-05-24 07:37:24 +02:00
SusiJo	b3e2f70651	Merge branch 'master' into cnvkit/antitarget	2022-05-24 07:36:07 +02:00
SusiJo	33a72367c6	Merge branch 'nf-core:master' into cnvkit_reference	2022-05-24 07:30:29 +02:00
Harshil Patel	a3e70777ad	Fix Conda tests	2022-05-23 22:39:12 +01:00
Harshil Patel	84f02a08a5	Update umitools/dedup module to make --output-stats optional	2022-05-23 22:31:09 +01:00
Matthias De Smet	91f9a0711d	Merge pull request #1683 from matthdsm/update/picard ... picard: make reference sequence optional	2022-05-23 20:06:11 +02:00
Sateesh Peri	da0ead705e	Merge branch 'master' into update/picard	2022-05-23 13:38:18 -04:00
SusiJo	8fec7ae321	added new testdata path	2022-05-23 19:01:46 +02:00
SusiJo	58c5ec2f4e	rm line ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-05-23 18:53:28 +02:00
SusiJo	86b5951c14	rm line ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-05-23 18:48:30 +02:00
SusiJo	24905e26e2	rm line ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-05-23 18:48:13 +02:00
SusiJo	ddb964a4bf	rm line ... Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-05-23 18:48:04 +02:00
SusiJo	bbee9e3c3b	add new module cnvkit/reference	2022-05-23 18:35:50 +02:00
Thiseas Christos Lamnidis	37c6fb8fed	Merge remote-tracking branch 'upstream/master' into sexdeterrmine	2022-05-23 17:30:21 +02:00
Thiseas Christos Lamnidis	96260ced83	Add test data to config	2022-05-23 17:15:57 +02:00
Thiseas Christos Lamnidis	9011fc7212	Corrected test-datasets input	2022-05-23 17:08:40 +02:00
SusiJo	5d5eacee63	Merge branch 'nf-core:master' into cnvkit/antitarget	2022-05-23 16:52:33 +02:00
SusiJo	4f9d672e55	added new module cnvkit/antitarget	2022-05-23 16:52:06 +02:00
FriederikeHanssen	51bd58809d	Merge pull request #1676 from FriederikeHanssen/gatk_filter ... Gatk filtervarianttranches	2022-05-23 15:54:57 +02:00
FriederikeHanssen	754afa9ff3	Merge branch 'master' into gatk_filter	2022-05-23 15:37:44 +02:00
Thiseas Christos Lamnidis	070dee0f5b	Use newly added test bam	2022-05-23 15:22:22 +02:00
jtangrot	853b76d16a	Add options for output file type	2022-05-23 14:02:10 +02:00
Rike	e34dcdd8bc	add brackets to contains	2022-05-23 13:19:42 +02:00
Rike	dc6ad1bff6	add brackets to contains	2022-05-23 13:07:08 +02:00
Ramprasad Neethiraj	9fb327fec7	Merge branch 'master' of https://github.com/nf-core/modules into rhocall	2022-05-23 13:06:00 +02:00
Rike	093e3aafdd	contains	2022-05-23 13:04:49 +02:00