8 commits

Author	SHA1	Message	Date
Lucpen	baa2845d28	Included args option in picard AddOrReplaceReadGroups (#1973) ... feat included args option in picard addorreplacereadgroups	2022-08-25 11:06:02 +01:00
Harshil Patel	682f789f93	Bump tool versions for modules required in viralrecon (#1859) ... * Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums	2022-07-07 14:48:04 +01:00
Matthias De Smet	63db63757c	bump picard versions	2022-05-30 10:15:40 +02:00
Matthias De Smet	20ebb89ff9	update to long args	2022-04-29 10:52:40 +02:00
Matthias De Smet	00467ac64a	update command line syntax for all tools	2022-04-29 07:57:11 +02:00
Matthias De Smet	6ca6de91f8	bump picard version across the board	2022-04-29 07:47:24 +02:00
Edmund Miller	f080015754	Prettier (#1405) ... * style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>	2022-03-18 14:27:50 +01:00
Sateesh	a0d91e4a93	Picard addorreplacereadgroups (#1305) ... * add picard-addorreplacereadgroups * add picard_addorreplacereadgroups * add new line to main.nf * remove trailing whitespaces * remove trailing whitespaces * change to output in test yml * add when directive * picard 2.26.10 -> 2.26.9 * picard 2.26.10 -> 2.26.9 test yml Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>	2022-02-18 19:59:06 -07:00