5 commits

Author	SHA1	Message	Date
FriederikeHanssen	c450b08a75	separate gvcf and vcf in output channels (#1371) ... * separate gvcf and vcf in output channels * regex not working, just using prefix now	2022-03-03 11:54:07 +01:00
Matthias Hörtenhuber	e745e167c1	Fix formatting in yaml files, add yamllint config (#1279) ... * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-02-15 11:15:27 +00:00
Mahesh Binzer-Panchal	e20e57f90b	Add when: block (#1261)	2022-02-04 09:53:32 +01:00
FriederikeHanssen	1287ba48fe	Update version & add intervals usage (#1214) ... * Update version & add intervals usage * Fix config when passing intervals as file * Use proper paths	2022-01-17 16:40:31 +01:00
Abhinav Sharma	6243c3792c	module: deepvariant (#572) ... * Add stubs for deepvariant [ci skip] * Update the stubs for deepvariant [ci skip] * functional with google docker image * cleanup * consume docker container within singularity executor * update the meta.yml file and ask for review * tweak the input channel shape and test data * tweak input data [ci skip] * update for the new syntax * remove the functions and rename meta vars * Update the arguments mechanism * update chr, region and checksum Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>	2022-01-17 12:25:36 +02:00