Commit graph

4 commits

Author SHA1 Message Date
James A. Fellows Yates
f469045a95
Fix DeepARG depenency issue with singularity containers (#1397)
* fix: remove left-over unnecessary code

* Adds --fakeroot option for singularity usage with DeepARG as workaround for broken conda dependency

* Update modules/deeparg/downloaddata/main.nf

Co-authored-by: Moritz E. Beber <midnighter@posteo.net>

* Update modules/deeparg/predict/main.nf

Co-authored-by: Moritz E. Beber <midnighter@posteo.net>

* Apply suggestions from code review

* Update main.nf

* Update main.nf

* Update main.nf

* Update main.nf

* Go back to original logic

Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
2022-03-17 13:08:51 +01:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Mahesh Binzer-Panchal
e20e57f90b
Add when: block (#1261) 2022-02-04 09:53:32 +01:00
James A. Fellows Yates
c3bacb9fdd
Add deeparg (#1234)
* Add deeparg download data

* Tweak downloaddata test.yml

* Add deeparg tests

* Apply suggestions from code review

* Fix output file paths in test

* Fix tests again md5sum to string
2022-01-26 15:19:16 +01:00